Xiaotao SHEN

Xiaotao SHEN

Nanyang Assistant Professor

Nanyang Technological University Singapore

Principal Investigator 👨‍🏫

My overarching research interests are bioinformatics algorithms development for multi-omics data, and their application to precision medicine. Specifically, I am interested in bioinformatics algorithm development, including 1) Comprehensive analysis workflow and deep learning for LC-MS data, 2) Metabolic network analysis, 3) Wearable and multi-omics data integration, and 4) microbiome and metabolome data integration. I also employed the developed bioinformatics algorithms as a unique systems biology approach to study the potential biomarkers and mechanisms of 1) pregnancy and related diseases, 2) aging and related diseases, and 3) cancer.

🐶 🏫 🈸 😄 👊 ✊ 👪 🐼 🌏 🎉 🇨🇳

Interests
  • 🖥️ Bioinformatics
  • 📱 Wearable
  • 💰 Multi-omics
  • 👴 Aging and Aging related diseases
  • 🤰 Pregnancy and Pregnancy related diseases
Education
  • Postdoctoral Research Fellow, 2019/4-2024/4

    Stanford University School of Medicine

  • Ph.D., 2013/9-2018/12

    University of Chinese Academy of Sciences

  • BSc, 2009/9-2013/7

    Inner Mongolia University

👥 Other Members

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Jingxiang ZHANG

Nanyang Technological University

Research Fellow (2024-)

Research interests
  • 📱 Microbiome
  • 🖥️ Bioinformatics
  • 💰 Multi-omics
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Yifei GE

Nanyang Technological University

PhD Candidate (2025-)

Research interests
  • 🖥 Biostatistics
  • 💰 Mathematics
  • 💻 Microbiome
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Chi Fang HSU

Nanyang Technological University

PhD Candidate (2025-)

Research interests
  • 🖥 Gut Microbiome
  • 🖥 Toxicology
  • 💻 Multi-Omics
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Jiramet KINCHAGAWAT

Nanyang Technological University

PhD Candidate (2025-)

Research interests
  • 💰 Multi-omics
  • 🖥 Bioinformatics
  • 💻 Artificial Intelligence
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Yijiang LIU

Nanyang Technological University

PhD Candidate (2025-)

Research interests
  • 🖥 Bioinformatics
  • 💰 Biostatistics
  • 💻 Population Health
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Yuting WANG

Nanyang Technological University

PhD Candidate (2025-)

Research interests
  • 🖥️ Bioinformatics
  • 💰 Multi-omics
  • 👴 Aging and Aging related diseases
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Feifan ZHANG

Nanyang Technological University

PhD Candidate (2025-)

Research interests
  • 🖥 Bioinformatics
  • 💻 Artificial Intelligence
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Kajal AGRAWAL

Nanyang Technological University

PhD Candidate (Co-supervised with Prof. Sunny Wong)

Research interests
  • 🧫 Oral and Gut Microbiome
  • 🦷 Periodontal Disease, Oral systemic disease
  • 🌱 Population Health
  • 🔬 Translational Research
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Xiaoyu XU

Nanyang Technological University

PhD Candidate (Co-supervised with Prof. Kun Qian)

Research interests
  • 🖥 renal cell carcinoma
  • 💰 Biostatistics
  • 💻 Multi-Omics
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Ruwen ZHOU

Nanyang Technological University

PhD Candidate (Co-supervised with Prof. Sunny Wong)

Research interests
  • 🖥 Biostatistics
  • 💰 Mathematics
  • 💻 Microbiome
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Shuli ZHANG

Northeastern University

Visiting PhD Student (2026-2027)

Research interests
  • 💰 Multi-omics
  • 🫀 Cardiovascular diseases
  • 🔬 Molecular genetics
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Diyan LI

Chengdu University

Visiting Scholar (2025-)

Research interests
  • 💰 Metagenomics
  • 🌐 Infertility
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Yuanming YANG

The First Affiliated Hospital of Guangzhou University of Chinese Medicine

Visiting Scholar (2025-)

Research interests
  • 💰 scRNA-seq
  • 🌐 multi-omics
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Ha Lan DO

VNU University of Science

Summer Intern (2026)

Research interests
  • 🧠 Gut-Brain Axis
  • 🦠 Gut Microbiome
  • 💡 Multi-omics
  • 💻 Bioinformatics
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Zhichen HUA

City University of Hong Kong

Summer Intern (2026)

Research interests
  • ⛏ Artificial intelligence
  • 💰 Wearable devices
  • 🧬 Bioinformatics
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