Xiaotao SHEN
Nanyang Assistant Professor
Nanyang Technological University Singapore
Principal Investigator 👨🏫
My overarching research interests are bioinformatics algorithms development for multi-omics data, and their application to precision medicine. Specifically, I am interested in bioinformatics algorithm development, including 1) Comprehensive analysis workflow and deep learning for LC-MS data, 2) Metabolic network analysis, 3) Wearable and multi-omics data integration, and 4) microbiome and metabolome data integration. I also employed the developed bioinformatics algorithms as a unique systems biology approach to study the potential biomarkers and mechanisms of 1) pregnancy and related diseases, 2) aging and related diseases, and 3) cancer.
🐶 🏫 🈸 😄 👊 ✊ 👨👩👦 🐼 🌏 🎉 🇨🇳
- 🖥️ Bioinformatics
- 📱 Wearable
- 💰 Multi-omics
- 👴 Aging and Aging related diseases
- 🤰 Pregnancy and Pregnancy related diseases
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Postdoctoral Research Fellow, 2019/4-2024/4
Stanford University School of Medicine
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Ph.D., 2013/9-2018/12
University of Chinese Academy of Sciences
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BSc, 2009/9-2013/7
Inner Mongolia University
👥 Other Members
Jingxiang ZHANG
Nanyang Technological University
Research Fellow (2024-)
📱 Microbiome, 🖥️ Bioinformatics, 💰 Multi-omics
Yifei GE
Nanyang Technological University
PhD Candidate (2025-)
🖥 Biostatistics, 💰 Mathematics, 💻 Microbiome
Chi Fang HSU
Nanyang Technological University
PhD Candidate (2025-)
🖥 Gut Microbiome, 🖥 Toxicology, 💻 Multi-Omics
Jiramet KINCHAGAWAT
Nanyang Technological University
PhD Candidate (2025-)
💰 Multi-omics, 🖥 Bioinformatics, 💻 Artificial Intelligence
Yijiang LIU
Nanyang Technological University
PhD Candidate (2025-)
🖥 Bioinformatics, 💰 Biostatistics, 💻 Population Health
Yuting WANG
Nanyang Technological University
PhD Candidate (2025-)
🖥️ Bioinformatics, 💰 Multi-omics, 👴 Aging and Aging related diseases
Feifan ZHANG
Nanyang Technological University
PhD Candidate (2025-)
🖥 Bioinformatics, 💻 Artificial Intelligence
Kajal AGRAWAL
Nanyang Technological University
PhD Candidate (Co-supervised with Prof. Sunny Wong)
🧫 Oral and Gut Microbiome, 🦷 Periodontal Disease, Oral systemic disease, 🌱 Population Health, 🔬 Translational Research
Xiaoyu XU
Nanyang Technological University
PhD Candidate (Co-supervised with Prof. Kun Qian)
🖥 renal cell carcinoma, 💰 Biostatistics, 💻 Multi-Omics
Ruwen ZHOU
Nanyang Technological University
PhD Candidate (Co-supervised with Prof. Sunny Wong)
🖥 Biostatistics, 💰 Mathematics, 💻 Microbiome
Yuanming YANG
The First Affiliated Hospital of Guangzhou University of Chinese Medicine
Visiting Scholar (2025-)
💰 scRNA-seq, 🌐 multi-omics
Hua ZHAO
Reproductive Medical Center, People's Hospital of Zhengzhou University and Henan Provincial People's Hospital
Visiting Scholar (2025-)
💰 Proteomics, 🌐 Metabolomics
Sahana RAHIM
Nanyang Technological University
URECA Student (2024-2025)
🖥 Bioinformatics, 💰 Data Science, 💻 Biology
Vaisnavi ARUMUGAM
Nanyang Technological University
FYP Undergraduate (2024-2025)
🖥 Bioinformatics, 🔬 Molecular Biology, 💻 Population Health
Shunpeng BAI
Huazhong Agricultural University
Remote Intern (2025-2026)
⛏ Embedded Dev, 💰 Multi-omics, 🧬 Quantum Biology, 💊 AIDD
Yiying CHEN
National University of Singapore
Intern Master student (2024-2026)
🧩 Bioinformatics, 🧠 Mult-omics, 💻 Deep learning
Jaewon CHUNG
Korea Advanced Institute of Science and Technology, South Korea
Summer Intern (2025)
📂 Bioinformatics (Multi-omics), 💻 Machine Learning, 🩺 Human Physiology and Pathology, 🧠 Neurodegenerative Disease and Psychiatric Illness, 🤖 Biomedical AI
Zijing DU
Southern Medical University
Visiting PhD Student (2024-2025)
⌚️ Wearable devices, 💰 Multi-omics, 🌐 Epidemiology
Sundara Ganapathy LETCHIMANAN
Nanyang Technological University
FYP Undergraduate (2024-2025)
🖥 Bioinformatics, 💻 Population Health, 📊 Biostatistics
Meilun LI
Nanyang Technological University
Master Student (2025)
🖥 Bioinformatics, 💻 Artificial Intelligence, 🧠 Large Language Models
Minghang LI
ETH Zurich
Remote Intern (2024)
⌚️ Wearable devices, 💰 Multi-omics, 💻 Algorithmic design
Yuxu PAN
Nanyang Technological University
Master Student (2025)
🖥 Mathematics, 🖥 Bioinformatics, 💻 Artificial Intelligence
Ke PANG
Chinese Academy of Medical Sciences & Peking Union Medical College
Visiting PhD Student (2025)
🩺 Clinical Gastroenterology, 🦠 Multi-omics, 🌐 Epidemiology
Qi QI
Xi’an Jiaotong-Liverpool University
Remote Intern (2024)
🖥️ Bioinformatics, 💰 Multi-omics, 💻 Deep learning
Zirui QIANG
Harbin Institute of Technology
Intern (2024)
🖥️ Bioinformatics, 💰 Multi-omics, 💻 Deep learning
Yuchen SHEN
Zhejiang University
Remote Intern (2025)
📉 Statistics, 💰 Multi-omics, 🤰 Human Physiology
Shenyu WANG
The Chinese University of Hong Kong, Shenzhen
Remote Intern (2025)
📂 Bioinformatics (Multi-omics), 💻 Machine Learning, 🩺 Human Physiology and Pathology, 🧠 Neurodegenerative Disease and Psychiatric Illness
Tong WU
Tianjin University of Traditional Chinese Medicine
Visiting PhD Student (2025)
💻 AI-driven drug design, 🌐 Deep learning for drug discovery, 🌱 Traditional Chinese Medicine, 🦠 Virtual screening
Yitong WU
The University of Hong Kong
Remote Intern (2025)
Biotechnology, Biochemistry, Multi-omics, Human Physiology and pathology
Chunlei ZHANG
Nanjing Agricultural University
Visiting PhD Student (2025-2026)
⌚️ Multi-omics, 💰 Diabetes, 🌐 Molecular genetics
Xin-Yue ZHANG
Nanyang Technological University
Master Student (2025)
🖥 Artificial intelligence for healthcare, 💻 Bioinformatics
Alumni Timeline
Collaboration Network in The Lab
Each node is a Shen Lab member. Bigger nodes mean more publications, colors reflect member category, and thicker lines indicate more shared papers.