Multi-omics

lagCI combines sliding windows, LOESS smoothing and bootstrap correction to estimate robust lagged correlations, and identify the causal relationships between molecules.

MAPA is a software for pathway-enrichment analysis and enrichment result interpretation using Large Language Modes (LLMs) that turns complex multi-omics datasets into clear biological insight.

TidyMicrobiome project is a comprehensive computational framework that can process the whole workflow of data processing and analysis for microbiome data using tidyverse principles.